Roberto T. Alves, Myriam R. Delgado, Alex A. Freitas (auth.), Ana L. C. Bazzan, Mark Craven, Natália F. Martins (eds.)3540855564, 9783540855569
This book constitutes the refereed proceedings of the Third Brazilian Symposium on Bioinformatics, BSB 2008, held in Sao Paulo, Brazil, in August 2008 – co-located with IWGD 2008, the International Workshop on Genomic Databases.
The 14 revised full papers and 5 extended abstracts were carefully reviewed and selected from 41 submissions. The papers address a broad range of current topics in computational biology and bioinformatics featuring original research in computer science, mathematics and statistics as well as in molecular biology, biochemistry, genetics, medicine, microbiology and other life sciences.
Table of contents :
Front Matter….Pages –
Multi-label Hierarchical Classification of Protein Functions with Artificial Immune Systems….Pages 1-12
Operon Prediction in Bacterial Genomes….Pages 13-22
An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures….Pages 23-34
Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions….Pages 35-46
A Hybrid Method for the Protein Structure Prediction Problem….Pages 47-56
Detecting Statistical Covariations of Sequence Physicochemical Properties….Pages 57-67
Molecular Models to Emulate Confinement Effects on the Internal Dynamics of Organophosphorous Hydrolase….Pages 68-78
On the Toric Graph as a Tool to Handle the Problem of Sorting by Transpositions….Pages 79-91
A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells….Pages 92-103
Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments….Pages 104-114
Transposition Distance Based on the Algebraic Formalism….Pages 115-126
Using BioAgents for Supporting Manual Annotation on Genome Sequencing Projects….Pages 127-139
Application of Genetic Algorithms to the Genetic Regulation Problem….Pages 140-151
Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion….Pages 152-160
Identity Transposon Networks in D. melanogaster ….Pages 161-164
Prediction of Protein-Protein Binding Hot Spots: A Combination of Classifiers Approach….Pages 165-168
AGN Simulation and Validation Model….Pages 169-173
A Practical Evaluation of BioProvider….Pages 174-177
Evaluation of Models for the Recognition of Hadwritten Digits in Medical Forms….Pages 178-181
Back Matter….Pages –
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