Shawn Bowers, Bertram Ludäscher (auth.), Erhard Rahm (eds.)3540213007, 9783540247456, 9783540213000
The 13 revised full papers and 2 revised short papers presented were carefully reviewed and selected from many submissions. The papers are organized in topical sections on scientific and clinical workflows, ontologies and taxonomies, indexing and clustering, integration tools and systems, and integration techniques.
Table of contents :
Front Matter….Pages –
An Ontology-Driven Framework for Data Transformation in Scientific Workflows….Pages 1-16
PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web….Pages 17-30
Process Based Data Logistics: a Solution for Clinical Integration Problems….Pages 31-46
Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework….Pages 47-62
A Universal Character Model and Ontology of Defined Terms for Taxonomic Description….Pages 63-78
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology….Pages 79-94
Index-Driven XML Data Integration to Support Functional Genomics….Pages 95-109
Heterogeneous Data Integration with the Consensus Clustering Formalism….Pages 110-123
LinkSuite TM : Formally Robust Ontology-Based Data and Information Integration….Pages 124-139
BioDataServer : an Applied Molecular Biological Data Integration Service….Pages 140-155
Columba : Multidimensional Data Integration of Protein Annotations….Pages 156-171
On the Integration of a Large Number of Life Science Web Databases….Pages 172-186
Efficient Techniques to Explore and Rank Paths in Life Science Data Sources….Pages 187-202
Links and Paths through Life Sciences Data Sources….Pages 203-211
Pathway and Protein Interaction Data: from XML to FDM Database….Pages 212-219
Back Matter….Pages –
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